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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11311563_11313653_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11311563 - 11313653
Intron Length:
2091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
ACWNGSFLEKKIDEHFKTSP
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010277
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020217
11301447 - 11328061
26615
ENSAPLT00000010831
11297016 - 11328029
31014