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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11315760_11315880_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11315760 - 11315880
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTAAATTAATT
Flanking Amino Acid:
GSEVSQIACGRHHTLAFVPS
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.3
0.64
0.9
71.7
38.2
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
57.6
0.32
1.8
77.9
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010277
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020217
11301447 - 11328061
26615
ENSAPLT00000010831
11297016 - 11328029
31014