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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11319644_11321072_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11319644 - 11321072
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TCGTCTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTATTCTAAAAT
Flanking Amino Acid:
TTIEEAVTVPRLIKKLNQQT
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.8
0.65
0.8
77.4
31.3
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
63.7
0.51
1.8
81.73
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010277
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020217
11301447 - 11328061
26615
ENSAPLT00000010831
11297016 - 11328029
31014