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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11335462_11336079_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11335462 - 11336079
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATATTC
5'SS Class:
major
3'SS Sequence:
CCCCTTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTTGCTAACT
Flanking Amino Acid:
LPEEKKKKFLAFLSGSDRIP
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
70.5
34.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.5
0.51
0.9
71.8
32.7
Minor 5ss
42.7
-0.8
3.1
56.7
42
Minor BPS
49.9
0.07
2.3
76.04
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011810
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012280
11334536 - 11355963
21428