About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11337453_11337664_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11337453 - 11337664
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCCAAT
U12 Branch Point Sequence:
CATCCAATATTT
Flanking Amino Acid:
KLESQDMTFVIPGEGGSVVE
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
63
0.32
1.2
70.7
33.4
Major PPT
84.4
0.77
0.8
80.4
31.5
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
43.3
-0.4
2
61.03
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011810
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012280
11334536 - 11355963
21428