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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11338977_11339063_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11338977 - 11339063
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACT
Flanking Amino Acid:
RSRLLWFPAQVPSHDDTFVL
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
64.3
47.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.1
0.5
1
67.7
42.7
Minor 5ss
30.2
-2.3
3.2
38.6
46.5
Minor BPS
82.1
1.09
1
91
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011810
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012280
11334536 - 11355963
21428