Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11339701_11343456_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11339701 - 11343456

Intron Length:

3756

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCCTCAGGG

5'SS Class:

major

3'SS Sequence:

ACAGGACTCTCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTGTAA

U12 Branch Point Sequence:

AGAAACAGGACT

Flanking Amino Acid:

TQKQAEAVKEQK*

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.9

0.26

1.3

48.2

44.9

Major BPS

49.9

-0

1.4

51.6

43.9

Major PPT

57.6

0.17

51.3

42.2

Minor 5ss

26.6

-2.7

38.9

46.2

Minor BPS

41.2

-0.6

1.8

55.3

39.3

Associated Gene:

Gene:

PYURF

Ensembl Gene ID:

ENSAPLG00000011502

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011968

11339322 - 11343465

4144