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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11342174_11343272_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11342174 - 11343272
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTCTTTGTGATT
Flanking Amino Acid:
VTYLFNRRHEVMFRRDIFQS
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
71.6
0.54
1
72
33.1
Major PPT
81.3
0.71
0.9
78.1
40.1
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
50.1
0.08
2
73.2
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011810
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012280
11334536 - 11355963
21428