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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11345055_11345406_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11345055 - 11345406
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGGTTT
5'SS Class:
major
3'SS Sequence:
GTTTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATTTACAG
Flanking Amino Acid:
RLQKKDRKALECLWSNLDAL
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
72.2
39.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.8
0.83
0.8
80.7
35.9
Minor 5ss
41.4
-1
3.7
60.4
46.7
Minor BPS
51.8
-0
1.9
65.39
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011810
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012280
11334536 - 11355963
21428