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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11350306_11350628_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11350306 - 11350628
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTACA
5'SS Class:
major
3'SS Sequence:
GCATTCCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATACCTTAAATT
Flanking Amino Acid:
ESIVLCLKERNSYPLNGIAT
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.3
37.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
69.1
0.43
1
62
38.9
Minor 5ss
41.7
-0.9
2.4
43.6
43.6
Minor BPS
57.5
0.31
1.6
72.49
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011810
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012280
11334536 - 11355963
21428