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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11352098_11352727_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11352098 - 11352727
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCATCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTTCTTCATCT
Flanking Amino Acid:
GADHTAVLSKDGLVCTFGAG
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
80
0.75
1
78.6
31
Major PPT
70.6
0.46
1
67.8
37.7
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
61
0.42
1.8
81.04
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011810
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012280
11334536 - 11355963
21428