About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11352820_11353587_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11352820 - 11353587
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTCACTTTATCT
Flanking Amino Acid:
FGQLGLGHTEDKDYPSYIEA
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
89.4
0.89
0.7
81.6
35.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
64.7
0.54
1.6
80.29
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011810
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012280
11334536 - 11355963
21428