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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11359428_11360611_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11359428 - 11360611
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGACTC
5'SS Class:
major
3'SS Sequence:
TGGTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGCCACTTACAC
Flanking Amino Acid:
RELQIYHPKAGTTSSCSIQL
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
62.5
42.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
72.3
0.5
0.9
65.6
36.2
Minor 5ss
35.3
-1.7
3.5
47.7
42.5
Minor BPS
46
-0.3
1.9
55.09
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011508
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011972
11358550 - 11361882
3333