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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11360716_11361450_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11360716 - 11361450
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAATA
5'SS Class:
strong_major
3'SS Sequence:
CTACTTACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TGGCCCTGACCC
Flanking Amino Acid:
TCLFWYLWPQVLMASWTLCV
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
0.9
79.3
28.7
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
71.6
0.49
0.9
65.5
34.6
Minor 5ss
31
-2.2
3.1
39.7
45.8
Minor BPS
50.1
-0
1.8
61.79
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011508
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011972
11358550 - 11361882
3333