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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11369505_11369978_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11369505 - 11369978
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGTGGT
5'SS Class:
major
3'SS Sequence:
TGGTCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
TCCCCAAAAAGC
Flanking Amino Acid:
CASGQLSPTARYTFLLAGGC
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
67.6
43.8
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
74.6
0.55
0.9
66.3
40.7
Minor 5ss
33.8
-1.8
3.5
49.2
47
Minor BPS
37.4
-0.9
2.1
45.61
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011521
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011985
11369386 - 11371328
1943