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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11370195_11370421_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11370195 - 11370421
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
GCACCCTCAGCT
Flanking Amino Acid:
GSLALESGDARPAVALSAIM
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
73.2
39.3
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
91
0.92
0.6
89
20
Minor 5ss
63.9
0.47
2.4
76.5
39.2
Minor BPS
48.7
-0
1.8
63.99
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011521
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011985
11369386 - 11371328
1943