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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11374968_11377374_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11374968 - 11377374
Intron Length:
2407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
ATGGATAAAACT
Flanking Amino Acid:
KDPSTTYAVKICKSQESKVA
Intron Amino Acid Position:
827

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
71.2
0.53
1
61
37.5
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
42.1
-0.5
2
59.71
43.8

Associated Gene:

Gene:
PRAG1
Ensembl Gene ID:
ENSAPLG00000011900
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012381
11373930 - 11389077
15148