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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11466394_11467128_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11466394 - 11467128
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTGCCTTATTA
Flanking Amino Acid:
FCIGLTGITQDIIDKADAFP
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.2
0.57
0.9
75
34.6
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
68.3
0.57
1.7
78.93
38.2

Associated Gene:

Gene:
ERI1
Ensembl Gene ID:
ENSAPLG00000012159
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028423
11463167 - 11471320
8154
ENSAPLT00000012669
11463645 - 11471044
7400