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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11470947_11471230_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11470947 - 11471230
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TTTGTCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCCGTTTTGACT
Flanking Amino Acid:
PPPPPAASPPGKQHGGAGEQ
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
57.1
42.2
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
77.6
0.62
0.8
70.3
36.4
Minor 5ss
34.2
-1.8
3
44.2
43.2
Minor BPS
58.1
0.33
1.4
69.33
42.7

Associated Gene:

Gene:
ERI1
Ensembl Gene ID:
ENSAPLG00000012159
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028423
11463167 - 11471320
8154