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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11669323_11672093_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11669323 - 11672093
Intron Length:
2771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCTAAAATAATT
Flanking Amino Acid:
SNECVLCLSNSEDKKDVQIY
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
73.5
37.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83.5
0.75
0.9
77.3
37
Minor 5ss
34.6
-1.8
2.8
42.9
43.8
Minor BPS
46.3
-0.2
2
68.16
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001677
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048276
11667045 - 11672139
5095
ENSAPLT00000001670
11666905 - 11672139
5235