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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11676670_11676778_R

Intron Information:

Intron Rank:
139896
Intron Class:
major
Intron Phase:
Intron Coordinates:
11676670 - 11676778
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
CTTTCCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
81.7
0.71
0.7
76.2
25.9
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
60.8
0.33
2
75.44
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022666
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039066
11676469 - 11682033
5565