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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11687600_11690240_F

Intron Information:

Intron Rank:
137475
Intron Class:
major
Intron Phase:
Intron Coordinates:
11687600 - 11690240
Intron Length:
2641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
GTGCTCTCAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
89.7
0.89
0.6
82.1
29.9
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
46.9
-0.1
1.7
62.17
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024024
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029898
11687430 - 11695132
7703