Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11706659_11706913_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11706659 - 11706913

Intron Length:

255

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGCGTGC

5'SS Class:

weak_major

3'SS Sequence:

GCTTGCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

AGCTGTGTCACA

Flanking Amino Acid:

LTGDNQQKEQGQGEVKKKKK

Intron Amino Acid Position:

552

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.6

0.13

1.3

46.6

44.7

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

80.6

0.69

0.9

76.7

37.4

Minor 5ss

40.8

-1

3.5

49.7

46.9

Minor BPS

38.6

-0.9

2.5

49.34

42.2

Associated Gene:

Gene:

SRP72

Ensembl Gene ID:

ENSAPLG00000008751

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009181

11704951 - 11717094

12144