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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11707052_11707684_R

Intron Information:

Intron Rank:
15
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
11707052 - 11707684
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TCTTCCTTTGCAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATCCCTGAACT
Flanking Amino Acid:
YSLVDPEKAKVLSKHLPSSD
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.6
-0
1.3
55.3
44.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
89.2
0.88
0.6
84.3
23.5
Minor 5ss
96.7
1.57
0.7
90.9
28.7
Minor BPS
68.6
0.66
1.5
80.11
41.1

Associated Gene:

Gene:
SRP72
Ensembl Gene ID:
ENSAPLG00000008751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009181
11704951 - 11717094
12144