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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11707763_11708339_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11707763 - 11708339
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAC
U12 Branch Point Sequence:
TCTTCTCCAAAG
Flanking Amino Acid:
EAISDLEELWKQNPKDVHTL
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
33.3
Major BPS
57
0.17
1.3
51.4
43.9
Major PPT
73
0.52
1
74.6
28
Minor 5ss
38.2
-1.3
3
49.5
41.2
Minor BPS
47.1
-0.3
2
57.57
43.9

Associated Gene:

Gene:
SRP72
Ensembl Gene ID:
ENSAPLG00000008751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009181
11704951 - 11717094
12144