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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11710972_11711166_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11710972 - 11711166
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAAT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGTGATTTATTT
Flanking Amino Acid:
IANNIITINKDQNVFDSKKK
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
73.7
36.4
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
39.4
-1.2
3.3
56.4
48
Minor BPS
49.1
0.01
1.8
69.14
42.4

Associated Gene:

Gene:
SRP72
Ensembl Gene ID:
ENSAPLG00000008751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009181
11704951 - 11717094
12144