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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11711446_11712025_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11711446 - 11712025
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
GATTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
TCCCCCTTGATT
Flanking Amino Acid:
LCRQSLSEDTDATEEDTEAE
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
66.5
40.1
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
81.5
0.71
0.8
78.2
36
Minor 5ss
43.5
-0.7
2.8
62.6
42
Minor BPS
68.8
0.67
1.2
76.28
40.9

Associated Gene:

Gene:
SRP72
Ensembl Gene ID:
ENSAPLG00000008751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009181
11704951 - 11717094
12144