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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11712058_11712812_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11712058 - 11712812
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCCTTCTAAATT
Flanking Amino Acid:
EAMKKLRKAEELCRQSLSED
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85
0.79
0.8
77.9
36.6
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
55.8
0.26
1.7
67.31
44.3

Associated Gene:

Gene:
SRP72
Ensembl Gene ID:
ENSAPLG00000008751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009181
11704951 - 11717094
12144