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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11712925_11713500_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11712925 - 11713500
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTTTCATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATG
Flanking Amino Acid:
AQSTWERVMPEDLGLRETTY
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
70.3
40.5
Major BPS
100
1.24
0.5
100
0
Major PPT
75.7
0.58
1
71.1
39.6
Minor 5ss
38.5
-1.3
3.3
54.8
43.4
Minor BPS
53.3
-0
1.8
61.75
41.5

Associated Gene:

Gene:
SRP72
Ensembl Gene ID:
ENSAPLG00000008751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009181
11704951 - 11717094
12144