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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11713645_11714435_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11713645 - 11714435
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATTACA
5'SS Class:
major
3'SS Sequence:
CTCCTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTGTTCTGAAGG
Flanking Amino Acid:
DKLKELYGQVLYKLERYDDC
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.3
34
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
82.2
0.73
0.8
79.5
32.5
Minor 5ss
36.2
-1.6
2.6
40.8
40
Minor BPS
49.3
-0.1
1.9
55.19
46.2

Associated Gene:

Gene:
SRP72
Ensembl Gene ID:
ENSAPLG00000008751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009181
11704951 - 11717094
12144