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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11714560_11716365_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11714560 - 11716365
Intron Length:
1806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAG
U12 Branch Point Sequence:
ACTCCCGTGACT
Flanking Amino Acid:
VINTHSKILSSDVIAFEKAY
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
51.9
0.05
1.6
63.4
42.8
Major PPT
79.1
0.66
0.9
72.8
37.5
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
55.6
0.26
2.1
74.96
41.9

Associated Gene:

Gene:
SRP72
Ensembl Gene ID:
ENSAPLG00000008751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009181
11704951 - 11717094
12144