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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11719849_11720909_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11719849 - 11720909
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTACT
5'SS Class:
major
3'SS Sequence:
CCCTTGTTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCTAACTAAATT
Flanking Amino Acid:
LPIVFARAELIYWGACALVL
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
78.3
35.5
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
76.6
0.6
0.8
71.2
33.1
Minor 5ss
34.9
-1.7
2.6
42.8
37.6
Minor BPS
53.7
0.2
1.9
73.4
43.7

Associated Gene:

Gene:
LEPROTL1
Ensembl Gene ID:
ENSAPLG00000020400
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020129
11719732 - 11721836
2105