About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11740056_11740873_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11740056 - 11740873
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTGTGCTCACCG
Flanking Amino Acid:
AGAAPRPRAAAALLWPRRCW
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
78.1
0.63
0.7
72.3
26
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
46.8
-0.3
2.3
59.2
48.3

Associated Gene:

Gene:
REST
Ensembl Gene ID:
ENSAPLG00000009372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009755
11739917 - 11751322
11406