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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11741786_11746534_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11741786 - 11746534
Intron Length:
4749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTGTTCCCT
Flanking Amino Acid:
NYIQHIRTHTGERPYQCAMC
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
84.2
0.77
0.8
79.9
32.1
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
39.6
-0.7
3.9
78.66
44.1

Associated Gene:

Gene:
REST
Ensembl Gene ID:
ENSAPLG00000009372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009755
11739917 - 11751322
11406