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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11758275_11766511_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11758275 - 11766511
Intron Length:
8237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
TGCTCCCCACAG
Flanking Amino Acid:
ITQQNEELLPDMQYDEDDDE
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
68.9
0.43
0.9
61.6
35
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
40.5
-0.8
2.1
46.57
45.5

Associated Gene:

Gene:
POLR2B
Ensembl Gene ID:
ENSAPLG00000009560
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037160
11758022 - 11780970
22949