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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11759791_11760324_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11759791 - 11760324
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTGCACTTACTT
Flanking Amino Acid:
AVADIKLSSAGWVAVTAHKE
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.6
0.6
0.9
69.5
36.8
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
49.1
0.01
1.8
65.95
44.9

Associated Gene:

Gene:
NOA1
Ensembl Gene ID:
ENSAPLG00000026782
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021098
11759585 - 11766338
6754