Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11760443_11760656_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11760443 - 11760656

Intron Length:

214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTGTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

CATCTCTTAGCT

Flanking Amino Acid:

EKHAGEELLKVPMGGKERMK

Intron Amino Acid Position:

584

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.5

26.8

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

81.7

0.71

0.8

80.2

31.9

Minor 5ss

24.3

-3

3.1

28.7

43.6

Minor BPS

60.6

0.41

1.6

74.35

42.2

Associated Gene:

Gene:

NOA1

Ensembl Gene ID:

ENSAPLG00000026782

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021098

11759585 - 11766338

6754