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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11760774_11761020_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11760774 - 11761020
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGA
5'SS Class:
major
3'SS Sequence:
CATTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATTT
Flanking Amino Acid:
AALGRVDYLQGEKPAWFSVV
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
64
42.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
81.7
34.2
Minor 5ss
27.2
-2.6
3.6
37.6
47.2
Minor BPS
54.9
0.23
1.6
71.35
40.7

Associated Gene:

Gene:
NOA1
Ensembl Gene ID:
ENSAPLG00000026782
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021098
11759585 - 11766338
6754