About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11767513_11768224_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11767513 - 11768224
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTTTCCATTACA
Flanking Amino Acid:
QHATGEVEEPPRYLLKFEQI
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
88
0.85
0.8
80.2
37.3
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
68.5
0.58
1.9
84.96
34.1

Associated Gene:

Gene:
POLR2B
Ensembl Gene ID:
ENSAPLG00000009560
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037160
11758022 - 11780970
22949
ENSAPLT00000024641
11765067 - 11780970
15904
ENSAPLT00000024418
11765067 - 11780121
15055
ENSAPLT00000010035
11766337 - 11780121
13785