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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11768338_11768598_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11768338 - 11768598
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
TTTTATTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTATTTTTATTC
Flanking Amino Acid:
MPNEARLRNLTYSAPLYVDI
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
71.6
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.7
0.8
0.7
81.9
29.7
Minor 5ss
34.2
-1.8
2.9
39.8
39.1
Minor BPS
55.6
0.16
1.5
63.07
36.9

Associated Gene:

Gene:
POLR2B
Ensembl Gene ID:
ENSAPLG00000009560
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037160
11758022 - 11780970
22949
ENSAPLT00000024641
11765067 - 11780970
15904
ENSAPLT00000024418
11765067 - 11780121
15055
ENSAPLT00000010035
11766337 - 11780121
13785