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Intron Name: Anas_platyrhynchos_platyrhynchos_4_11768819_11769711_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11768819 - 11769711

Intron Length:

893

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTAACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

TTGTTTGTAACA

Flanking Amino Acid:

GYFIINGSEKVLIAQEKMAT

Intron Amino Acid Position:

193

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.1

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

68.7

0.42

62.4

42.4

Minor 5ss

30.9

-2.2

3.6

45.9

49.3

Minor BPS

59.7

0.3

74.03

38.5

Associated Gene:

Gene:

POLR2B

Ensembl Gene ID:

ENSAPLG00000009560

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037160

11758022 - 11780970

22949

ENSAPLT00000024641

11765067 - 11780970

15904

ENSAPLT00000024418

11765067 - 11780121

15055

ENSAPLT00000010035

11766337 - 11780121

13785