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Intron Name: Anas_platyrhynchos_platyrhynchos_4_11769871_11770914_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11769871 - 11770914

Intron Length:

1044

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCCTA

5'SS Class:

strong_major

3'SS Sequence:

CCCATCTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTAAT

U12 Branch Point Sequence:

TCATTTTAGACT

Flanking Amino Acid:

WVSMLARGGQGAKKSAIGQR

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

38.6

Major BPS

0.47

1.2

69.9

35.3

Major PPT

0.56

0.8

72.5

32.1

Minor 5ss

41.4

-1

3.1

56.1

Minor BPS

53.8

0.2

1.7

70.38

41.4

Associated Gene:

Gene:

POLR2B

Ensembl Gene ID:

ENSAPLG00000009560

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037160

11758022 - 11780970

22949

ENSAPLT00000024641

11765067 - 11780970

15904

ENSAPLT00000024418

11765067 - 11780121

15055

ENSAPLT00000010035

11766337 - 11780121

13785