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Intron Name: Anas_platyrhynchos_platyrhynchos_4_11773536_11773795_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11773536 - 11773795

Intron Length:

260

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTAAA

5'SS Class:

strong_major

3'SS Sequence:

ATGTTTTCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TATGTTTTCACT

Flanking Amino Acid:

GMVCPAETPEGHAVGLVKNL

Intron Amino Acid Position:

517

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

85.1

25.8

Major BPS

71.2

0.53

70.3

31.9

Major PPT

69.9

0.45

64.2

42.1

Minor 5ss

35.1

-1.7

2.7

42.4

44.3

Minor BPS

0.27

1.8

75.92

41.3

Associated Gene:

Gene:

POLR2B

Ensembl Gene ID:

ENSAPLG00000009560

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037160

11758022 - 11780970

22949

ENSAPLT00000024641

11765067 - 11780970

15904

ENSAPLT00000024418

11765067 - 11780121

15055

ENSAPLT00000010035

11766337 - 11780121

13785