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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11773936_11774029_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11773936 - 11774029
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
CCCTTCTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
LEEISPAAIADATKIFVNGC
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.1
61.4
37.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.7
0.67
0.7
72.3
32.4
Minor 5ss
40.3
-1.1
3
46.1
43.3
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
POLR2B
Ensembl Gene ID:
ENSAPLG00000009560
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024418
11765067 - 11780121
15055
ENSAPLT00000010035
11766337 - 11780121
13785
ENSAPLT00000037160
11758022 - 11780970
22949
ENSAPLT00000024641
11765067 - 11780970
15904