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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11775359_11775829_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11775359 - 11775829
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CAATGTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTCACTCAATG
Flanking Amino Acid:
EYLRFRELPAGINSIVAIAS
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
69.9
0.45
1
61.8
42.9
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
51.6
-0
1.8
61.09
40.5

Associated Gene:

Gene:
POLR2B
Ensembl Gene ID:
ENSAPLG00000009560
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024641
11765067 - 11780970
15904
ENSAPLT00000024418
11765067 - 11780121
15055
ENSAPLT00000010035
11766337 - 11780121
13785
ENSAPLT00000037160
11758022 - 11780970
22949