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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11775927_11777094_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11775927 - 11777094
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GACTTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
GCTTTATGACTT
Flanking Amino Acid:
NRSAVDRGFFRSVFYRSYKE
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
85.7
25.6
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
76.2
0.59
1
72.8
42
Minor 5ss
46.8
-0.3
2.7
66.4
45.1
Minor BPS
45.1
-0.2
1.9
62.05
42.2

Associated Gene:

Gene:
POLR2B
Ensembl Gene ID:
ENSAPLG00000009560
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037160
11758022 - 11780970
22949
ENSAPLT00000024641
11765067 - 11780970
15904
ENSAPLT00000024418
11765067 - 11780121
15055
ENSAPLT00000010035
11766337 - 11780121
13785