Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11777850_11778121_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11777850 - 11778121

Intron Length:

272

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGTGATT

5'SS Class:

major

3'SS Sequence:

TTCTCTGCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

ATTTTGGGAAGT

Flanking Amino Acid:

GTCGIQYRQEDMPFTCEGIT

Intron Amino Acid Position:

953

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

1.1

75.3

40.4

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

77.7

0.62

0.8

73.4

31.6

Minor 5ss

36.9

-1.5

3.6

47.4

Minor BPS

39.9

-0.6

2.7

66.24

44.6

Associated Gene:

Gene:

POLR2B

Ensembl Gene ID:

ENSAPLG00000009560

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010035

11766337 - 11780121

13785

ENSAPLT00000037160

11758022 - 11780970

22949

ENSAPLT00000024641

11765067 - 11780970

15904

ENSAPLT00000024418

11765067 - 11780121

15055