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Intron Name: Anas_platyrhynchos_platyrhynchos_4_11778230_11779135_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11778230 - 11779135

Intron Length:

906

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCCCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TTTTGTATATCT

Flanking Amino Acid:

GHLIECLQGKVSANKGEIGD

Intron Amino Acid Position:

989

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.8

33.7

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

78.6

0.64

0.7

73.8

24.6

Minor 5ss

32.8

-2

2.9

40.7

45.1

Minor BPS

49.9

0.07

2.2

80.49

41.6

Associated Gene:

Gene:

POLR2B

Ensembl Gene ID:

ENSAPLG00000009560

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010035

11766337 - 11780121

13785

ENSAPLT00000037160

11758022 - 11780970

22949

ENSAPLT00000024641

11765067 - 11780970

15904

ENSAPLT00000024418

11765067 - 11780121

15055