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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11779250_11779338_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11779250 - 11779338
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAATCA
5'SS Class:
major
3'SS Sequence:
TTAACTACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ATTGCATTAACT
Flanking Amino Acid:
DYGYHLRGNEVLYNGFTGRK
Intron Amino Acid Position:
1027

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
66.4
33.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
74.8
0.56
0.9
71.2
39.2
Minor 5ss
43.7
-0.7
2.9
57.2
47.1
Minor BPS
71.6
0.76
1.7
87.83
37.1

Associated Gene:

Gene:
POLR2B
Ensembl Gene ID:
ENSAPLG00000009560
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024641
11765067 - 11780970
15904
ENSAPLT00000024418
11765067 - 11780121
15055
ENSAPLT00000010035
11766337 - 11780121
13785
ENSAPLT00000037160
11758022 - 11780970
22949