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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11779500_11779805_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11779500 - 11779805
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTCTTTTATCT
Flanking Amino Acid:
LNRQPMEGRSRDGGLRFGEM
Intron Amino Acid Position:
1080

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
73.8
42.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81
0.7
0.8
72.6
37.6
Minor 5ss
36.4
-1.5
3.3
49.5
46.5
Minor BPS
61.1
0.43
1.6
77.62
38.8

Associated Gene:

Gene:
POLR2B
Ensembl Gene ID:
ENSAPLG00000009560
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010035
11766337 - 11780121
13785
ENSAPLT00000037160
11758022 - 11780970
22949
ENSAPLT00000024641
11765067 - 11780970
15904
ENSAPLT00000024418
11765067 - 11780121
15055